RegMOD specifications

Information


Unique identifier OMICS_08338
Name RegMOD
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Versioning


No version available

Maintainer


  • person_outline Luonan Chen

Publication for RegMOD

RegMOD citations

 (2)
library_books

Network based analysis of omics data: the LEAN method

2016
Bioinformatics
PMCID: 5408824
PMID: 27797778
DOI: 10.1093/bioinformatics/btw676

[…] oach not using network information, LEAN, the GSEA () enrichment score applied to our definition of local subnetworks (‘local GSEA’), KeyPathwayMiner (KPM) , the jActiveModules method (), GiGA () and RegMOD (). Performance was measured using Receiver-Operator-Characteristic (ROC) analysis comparing true positive rates (TPR) and false positive rates (FPR) over all possible detection cutoffs with si […]

library_books

Active subnetwork recovery with a mechanism dependent scoring function; with application to angiogenesis and organogenesis studies

2013
BMC Bioinformatics
PMCID: 3663784
PMID: 23432934
DOI: 10.1186/1471-2105-14-59

[…] and responsible for carrying out the biological function of interest.One measure of edge strength is the correlation of gene expression between the two adjacent nodes [,]. Qiu et al. developed a tool RegMOD which classifies genes as “active” or “not active” using a support vector regression method where a diffusion kernel matrix specifies the relationship between adjacent genes using the Pearson c […]

RegMOD institution(s)
Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing, China

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