Provides comparative analysis of microbial regulons. RegPredict is a highly interactive web server specifically designed for identification of Transcription Factor Binding Sites (TFBSs). This server has a user-friendly interface and multiple functionality including: (i) scanning of microbial genomes with annotated DNA motifs and collections of aligned binding sites, (ii) collecting upstream DNA regions for any gene set and identification of novel TFBS motifs and (iii) comparative analysis of the genomic context of candidate TFBSs in the group of genomes.
Lawrence Berkeley National Laboratory, Berkeley, CA, USA; Burnham Institute for Medical Research, La Jolla, CA, USA; Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow, Russia; Faculty of Bioengineering and Bioinformatics, Moscow State University, Moscow, Russia; Department of Bioengineering, University of California, Berkeley, CA, USA; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA
RegPredict funding source(s)
Supported by the US Department of Energy, Office of Science, Office of Biological and Environmental Research, Genomics Program: GTL through contract DE-AC02-05CH11231 between Lawrence Berkeley National Laboratory and the US Department of Energy; National Science Foundation (award DBI-0850546); Howard Hughes Medical Institute (55005610); Russian Foundation for Basic Research (08-04-01000, 09-04-92745, 10-04-01768, 09-04-92742); Russian Academy of Sciences (program ‘Molecular and Cellular Biology’); Federal Agency on Education (P2581); Russian Science Agency (contract 2.740.11.0101); and Russian President’s grant for young scientists (MK-422.2009.4).