RegRNA pipeline

RegRNA specifications


Unique identifier OMICS_00415
Name RegRNA
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publications for RegRNA

RegRNA citations

PMCID: 5584004

[…] model on a paired design, using the limma bioconductor r package [66]. there was a strong correlation (rho = 0.81) between microarray and rna-seq fold change estimates at 4 h., we compared expressed regrna regions detected in our non-activated cd4+ t cell samples vs. those found using cage-seq by the fantom5 consortium. rna-seq, using a regulatory reference obtained from chromatin states, yields […]

PMCID: 4964384

[…] site master list). to investigate if snps may alter splicing sites, or related regulatory regions such as exonic and/or intronic splicing enhancer/silencer (ese/ess and ise/iss) we used the web tool regrna 2.0 [42], as previously described in scarpato et al. [43]. briefly, fasta files of the nucleotide sequences surrounding the polymorphic site (10 bp upstream and 10 bp downstream the snp) […]

RegRNA institution(s)
Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsin-Chu, Taiwan

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