Main logo
?
tutorial arrow
×
Create your own tool library
Bookmark tools and put favorites into folders to find them easily.

RAVEN | In silico detection of sequence variations modifying transcriptional regulation

Online

Searchs putative regulatory genetic variation in favorite gene. SNPs (from dbSNP and user defined) are analyzed for overlap with potential transcription factor binding sites (TFBS) and phylogenetic footprinting using UCSC phastCons scores from multiple alignments of 8 vertebrate genomes.

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

RAVEN forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

RAVEN classification

RAVEN specifications

Unique identifier:
OMICS_01932
Interface:
Web user interface
Computer skills:
Basic
Maintained:
Yes
Name:
Regulatory analysis of Variation in ENhancers
Restrictions to use:
None
Stability:
Stable

RAVEN support

Maintainer

  • Malin C. Andersen <>

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Department of Gene Technology, School of Biotechnology, AlbaNova University Center, Royal Institute of Technology (KTH), Stockholm, Sweden; Atherosclerosis Research Unit, Department of Medicine, Center for Molecular Medicine, Karolinska University Hospital—Solna, Stockholm, Sweden; Computational Biology Unit—Bergen Center for Computational Science and Sars Centre for Marine Molecular Biology, University of Bergen, HIB, Bergen, Norway; Program for Genomics and Bioinformatics, Department of Cell and Molecular Biology, Karolinska Institutet, Stockholm, Sweden; Ontario Cancer Institute, Princess Margaret Hospital, University of Toronto, Toronto, ON, Canada; Centre for Molecular Medicine and Therapeutics (CMMT), Child and Family Research Institute, Department of Medical Genetics, University of British Columbia, Vancouver, BC, Canada; Karolinska Biomics Center, Karolinska University Hospital, Stockholm, Sweden

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.