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Regulatory Sequence Analysis Tools peak-motifs RSAT peak-motifs

A computational pipeline that discovers motifs in peak sequences, compares them with databases, exports putative binding sites for visualization in the UCSC genome browser and generates an extensive report suited for both naive and expert users. RSAT peak-motifs relies on time- and memory-efficient algorithms enabling the treatment of several thousand peaks within minutes.

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RSAT peak-motifs classification

RSAT peak-motifs specifications

Interface:
Web user interface
Input format:
FASTA, BED, raw, wconsensus, IG, multi, tab
Stability:
Stable
Restrictions to use:
None
Computer skills:
Basic
Maintained:
Yes

RSAT peak-motifs distribution

Credits

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Publications

Institution(s)

Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Berlin, Germany

Link to literature

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