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Regulome Explorer specifications

Information


Unique identifier OMICS_28867
Name Regulome Explorer
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes

Maintainers


  • person_outline Lesley Wilkerson
  • person_outline Subha Madhavan

Publication for Regulome Explorer

Regulome Explorer citations

 (3)
library_books

The Cancer Genome Atlas (TCGA): an immeasurable source of knowledge

2015
PMCID: 4322527
PMID: 25691825
DOI: 10.5114/wo.2014.47136

[…] sation type involves networks, matrices, and heatmaps. The cBio portal complements existing tools, such as the TCGA and ICGC data portals, the IGV, the UCSC Cancer Genomics Browser, and IntOGen [, ]. Regulome Explorer (http://explorer.cancerregulome.org/) is a web tool for the integrative exploration of associations between clinical and molecular features of TCGA data. Regulome enables users to se […]

library_books

Comprehensive Molecular Characterization of Urothelial Bladder Carcinoma

2014
Nature
PMCID: 3962515
PMID: 24476821
DOI: 10.1038/nature12965

[…] o.soe.ucsc.edu/paradigm/tutorial/), SpliceSeq (http://bioinformatics.mdanderson.org/main/SpliceSeq:Overview), MBatch batch effects assessor (http://bioinformatics.mdanderson.org/tcgabatcheffects) and Regulome Explorer (http://explorer.cancerregulome.org/). Also see . […]

library_books

Visualizing multidimensional cancer genomics data

2013
Genome Med
PMCID: 3706894
PMID: 23363777
DOI: 10.1186/gm413

[…] iques to make this possible. Other web frameworks with various visualization and some optional analysis possibilities are being developed, including the cBio Cancer Genomics Portal [], IntOGen [] and Regulome Explorer []. Open source and plug-in architecture facilitates quick adoption of these new platforms.Although not discussed at length in this review, the use of cancer genomics data visualizat […]

Citations

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Regulome Explorer institution(s)
Department of Oncology, Innovation Center for Biomedical Informatics, Georgetown University Medical Center, Washington, DC, USA; Department of Oncology, Lombardi Comprehensive Cancer Center, Georgetown University Medical Center, Washington, DC, USA; Indivumed GmbH, Hamburg, Germany; Department of Pathology, Lombardi Comprehensive Cancer Center, Georgetown University Medical Center, Washington, DC, USA
Regulome Explorer funding source(s)
Supported by Award Number U24CA143835 from the National Cancer Institute.

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