RELION statistics

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Citations per year

Number of citations per year for the bioinformatics software tool RELION
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Tool usage distribution map

This map represents all the scientific publications referring to RELION per scientific context
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Associated diseases

This word cloud represents RELION usage per disease context
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Popular tool citations

chevron_left 3D macromolecule reconstruction Structure refinement Image enhancement Image classification chevron_right
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Protocols

RELION specifications

Information


Unique identifier OMICS_15597
Name RELION
Alternative name REgularised LIkelihood OptimisatioN
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
License GNU General Public License version 2.0
Computer skills Medium
Version 3
Stability Stable
Maintained Yes

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Versioning


No version available

Maintainers


  • person_outline Sjors Scheres
  • person_outline Erik Lindahl

Additional information


https://github.com/3dem/relion/

Publications for REgularised LIkelihood OptimisatioN

RELION citations

 (445)
library_books

Structure of a cleavage independent HIV Env recapitulates the glycoprotein architecture of the native cleaved trimer

2018
Nat Commun
PMCID: 5955915
PMID: 29769533
DOI: 10.1038/s41467-018-04272-y

[…] ee 2D classification were carried out using MSA/MRA with a binning factor of 2, to remove amorphous particles. After 2D classification, the 2× binned particles were subject to 3D classification using RELION, starting with an initial reference model of an unliganded trimer filtered to 60 Å resolution without imposing symmetry, and requesting six classes. Two stoichiometric classes were identified i […]

call_split

Structural and immunologic correlates of chemically stabilized HIV 1 envelope glycoproteins

2018
PLoS Pathog
PMCID: 5944921
PMID: 29746590
DOI: 10.1371/journal.ppat.1006986
call_split See protocol

[…] d to automated difference-of-Gaussian particle selection []. The resulting set of molecular projection-image candidates were binned by a factor of 4 and subjected to reference-free class averaging in Relion 1.4b1 []. Projection images belonging to structural classes were selected for angular refinement and reconstruction using a low-pass filtered unliganded HIV-1 Env trimer density map as a refere […]

call_split

Structural basis for cofilin binding and actin filament disassembly

2018
Nat Commun
PMCID: 5945598
PMID: 29749375
DOI: 10.1038/s41467-018-04290-w
call_split See protocol

[…] A total of 1,111 images were collected in two microscope sessions (414 and 697 micrographs, respectively). Image processing was performed with RELION 2.0 software,. After motion correction with MotionCorr and CTF estimation with Gctf, 1,093 images were selected for further image processing. Filaments were manually picked with e2helixboxer, a […]

call_split

Cryo EM of nucleosome core particle interactions in trans

2018
Sci Rep
PMCID: 5935684
PMID: 29728587
DOI: 10.1038/s41598-018-25429-1
call_split See protocol

[…] rticles were then used for semi-automatic and automatic particle picking in XMIPP. The contrast transfer function parameters were determined by CTFFIND4. The 2D class averages were generated with the Relion software package. Bad class averages were removed from further data analysis. The 3D refinements and classifications were subsequently done in Relion. All final refinements were done in Relion […]

library_books

Structure and mechanism of the two component α helical pore forming toxin YaxAB

2018
Nat Commun
PMCID: 5935710
PMID: 29728606
DOI: 10.1038/s41467-018-04139-2

[…] The image processing workflow was performed with RELION 2.1. Image stacks were motion corrected with the program MotionCor2, after which the contrast transfer function values were estimated and corrected using Kai Zhang’s Gctf. 1009 particles were m […]

library_books

Ribosome protection by antibiotic resistance ATP binding cassette protein

2018
Proc Natl Acad Sci U S A
PMCID: 5960329
PMID: 29712846
DOI: 10.1073/pnas.1803313115

[…] mo Fisher Scientific) operated at 300 kV. Data were acquired automatically in movie mode as sets of 20 frames at a nominal magnification of 75,000×. Particles picking and data processing were done in Relion 2.0. A total of 310,270 particles were used for reference-free 2D classification, and nonribosome particles were removed. The remaining 186,654 particles were used for 3D classification using e […]


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RELION institution(s)
MRC Laboratory of Molecular Biology, Cambridge, UK
RELION funding source(s)
Supported by the UK Medical Research Council (MC UP A025 1013); the Swiss National Science Foundation (SNF: P2BSP2 168735); the Swedish Research Council (2017-04641) and the Knut and Alice Wallenberg Foundation.

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