REMP specifications

Information


Unique identifier OMICS_15416
Name REMP
Alternative name Repetitive Element Methylation Prediction
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.5.2
Stability Stable
Requirements
methods, stats, parallel, graphics, BiocGenerics, IRanges, GenomicRanges, utils, S4Vectors, Biostrings, BiocParallel, BSgenome, BSgenome.Hsapiens.UCSC.hg19, rmarkdown, knitr, foreach, org.Hs.eg.db, AnnotationHub, doParallel, iterators, caret, impute, kernlab, settings, ranger, minfiDataEPIC
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainer


  • person_outline Yinan Zheng

REMP citation

library_books

Prediction of genome wide DNA methylation in repetitive elements

2017
Nucleic Acids Res
PMCID: 5587781
PMID: 28911103
DOI: 10.1093/nar/gkx587

[…] We developed a prediction algorithm and corresponding R package REMP to predict locus-specific RE methylation by mining methylation information from neighboring CpG sites profiled in Infinium methylation arrays. We validated the reliability of our algorithm using […]

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