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Renkan Blast

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Blasts query sequences on 18S and 28S radiolaria databases. Renkan Blast permits to search a nucleotide database using a nucleotide query, using the NCBI BLAST and blastn command line tool. Algorithms include blastn, megablast, and discontiguous megablast. User can also search against a FASTA file of subject (target) sequences. This method is slower (only one CPU is used), but more importantly gives e-values for pairwise searches (very small e-values which will look overly significant).

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Renkan Blast classification

Renkan Blast specifications

Interface:
Web user interface
Input format:
BLASTN
Stability:
Stable
Restrictions to use:
None
Computer skills:
Basic
Maintained:
Yes

Renkan Blast support

Maintainer

  • Laurence Garczarek <>

Link to literature

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