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RepbaseSubmitter specifications

Information


Unique identifier OMICS_26547
Name RepbaseSubmitter
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements
Java RE
Maintained Yes

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Maintainers


  • person_outline Jurka J. <>
  • person_outline Oleksiy Kohany <>
  • person_outline Andrew Gentles <>
  • person_outline Lukasz Hankus <>

Publication for RepbaseSubmitter

RepbaseSubmitter in publication

PMCID: 5500898
PMID: 28748222
DOI: 10.21956/wellcomeopenres.12821.r23884

[…] similarity, was aligned with mafft. the phylogenetic tree was generated as the msp tree, using the protgammaigtr model. potential transpososons were analysed with http://www.girinst.org (using the repbasesubmitter section)., the amino acid sequences of the plasmodium interspersed repeat ( pir) genes were extracted from five genomes (pcym, p. vivax p01, p. coatneyi, p. ovale curtisi and p. […]


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RepbaseSubmitter institution(s)
Genetic Information Research Institute, CA, USA; School of Medicine, Stanford University Stanford, CA, USA
RepbaseSubmitter funding source(s)
Supported by National Institutes of Health grant 5 P41 LM006252-08.

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