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RepbaseSubmitter specifications


Unique identifier OMICS_26547
Name RepbaseSubmitter
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Java RE
Maintained Yes



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  • person_outline Jurka J. <>
  • person_outline Oleksiy Kohany <>
  • person_outline Andrew Gentles <>
  • person_outline Lukasz Hankus <>

Publication for RepbaseSubmitter

RepbaseSubmitter in publication

PMCID: 5500898
PMID: 28748222
DOI: 10.21956/wellcomeopenres.12821.r23884

[…] similarity, was aligned with mafft. the phylogenetic tree was generated as the msp tree, using the protgammaigtr model. potential transpososons were analysed with (using the repbasesubmitter section)., the amino acid sequences of the plasmodium interspersed repeat ( pir) genes were extracted from five genomes (pcym, p. vivax p01, p. coatneyi, p. ovale curtisi and p. […]

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RepbaseSubmitter institution(s)
Genetic Information Research Institute, CA, USA; School of Medicine, Stanford University Stanford, CA, USA
RepbaseSubmitter funding source(s)
Supported by National Institutes of Health grant 5 P41 LM006252-08.

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