Repeat aware scaffolding evaluation framework specifications

Information


Unique identifier OMICS_28316
Name Repeat aware scaffolding evaluation framework
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Input data A reference genome file, assembly contigs, and a scaffolding output file.
Input format FASTA+FASTA
Operating system Unix/Linux
Programming languages Python, Shell (Bash)
Computer skills Advanced
Version 1.0
Stability Stable
Requirements
Biopyhton, pythonAPI of CPLEX, MUMer
Maintained Yes

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Additional information


https://mandricigor.github.io/repeat-aware/

Publication for Repeat aware scaffolding evaluation framework

Repeat aware scaffolding evaluation framework institution(s)
Department of Computer Science, Georgia State University, Atlanta, GA, USA

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