RepeatAnalyzer statistics

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RepeatAnalyzer specifications

Information


Unique identifier OMICS_12121
Name RepeatAnalyzer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Version 2.8
Stability Stable
Requirements
Numpy, basemap, pyshp, geopy
Maintained Yes

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Maintainer


  • person_outline Assefaw H. Gebremedhin <>

Publication for RepeatAnalyzer

RepeatAnalyzer in publications

 (2)
PMCID: 5876571
PMID: 29510496
DOI: 10.3390/vetsci5010026

[…] that msp1as could be utilised as a genetic marker for diversity analysis in a. centrale., both of our recent studies examining a. marginale and a. centrale in south africa [,] have used the program repeatanalyzer [] to identify, curate, map, and analyse msp1as (a. centrale) and msp1a repeats (a. marginale). these studies reveal the urgent need for a centralized online repeat genotype/strain […]

PMCID: 5753507
PMID: 29298712
DOI: 10.1186/s13071-017-2595-5

[…] fisher scientific). recombinant clones and amplicons were sequenced at inqaba biotechnical industries as described above., sequences were assembled and aligned using clc genomics workbench 7.5.1. repeatanalyzer [] was used to identify, curate, map and analyse msp1a repeats and a. marginale strains. new names (up1 to up36) were given to novel repeats that were not recognized by repeatanalyzer. […]


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RepeatAnalyzer institution(s)
School of Electrical Engineering and Computer Science, Washington State University, Pullman, WA, USA; Department of Veterinary Microbiology and Pathology, Washington State University, Pullman, WA, USA
RepeatAnalyzer funding source(s)
This work was supported by a start-up fund from the School of Electrical Engineering and Computer Science, Washington State University and, in its later stages, by NSF CAREER award IIS-1553528.

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