RepeatAnalyzer statistics

info info

Citations per year


Popular tool citations

chevron_left Tandem repeat prediction chevron_right

Tool usage distribution map

Tool usage distribution map
info info

Associated diseases

Associated diseases
Want to access the full stats & trends on this tool?

RepeatAnalyzer specifications


Unique identifier OMICS_12121
Name RepeatAnalyzer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Version 2.8
Stability Stable
Numpy, basemap, pyshp, geopy
Maintained Yes


No version available


  • person_outline Assefaw H. Gebremedhin <>

Publication for RepeatAnalyzer

RepeatAnalyzer citations


Detection and Characterisation of Anaplasma marginale and A. centrale in South Africa

PMCID: 5876571
PMID: 29510496
DOI: 10.3390/vetsci5010026

[…] that msp1as could be utilised as a genetic marker for diversity analysis in a. centrale., both of our recent studies examining a. marginale and a. centrale in south africa [,] have used the program repeatanalyzer [] to identify, curate, map, and analyse msp1as (a. centrale) and msp1a repeats (a. marginale). these studies reveal the urgent need for a centralized online repeat genotype/strain […]


Co infections with multiple genotypes of Anaplasma marginale in cattle indicate pathogen diversity

PMCID: 5753507
PMID: 29298712
DOI: 10.1186/s13071-017-2595-5

[…] fisher scientific). recombinant clones and amplicons were sequenced at inqaba biotechnical industries as described above., sequences were assembled and aligned using clc genomics workbench 7.5.1. repeatanalyzer [] was used to identify, curate, map and analyse msp1a repeats and a. marginale strains. new names (up1 to up36) were given to novel repeats that were not recognized by repeatanalyzer. […]

Want to access the full list of citations?
RepeatAnalyzer institution(s)
School of Electrical Engineering and Computer Science, Washington State University, Pullman, WA, USA; Department of Veterinary Microbiology and Pathology, Washington State University, Pullman, WA, USA
RepeatAnalyzer funding source(s)
This work was supported by a start-up fund from the School of Electrical Engineering and Computer Science, Washington State University and, in its later stages, by NSF CAREER award IIS-1553528.

RepeatAnalyzer reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review RepeatAnalyzer