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RepeatAnalyzer specifications

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Unique identifier OMICS_12121
Name RepeatAnalyzer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Version 2.8
Stability Stable
Requirements
Numpy, basemap, pyshp, geopy
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Assefaw H. Gebremedhin <>

Publication for RepeatAnalyzer

RepeatAnalyzer citations

 (2)
library_books

Detection and Characterisation of Anaplasma marginale and A. centrale in South Africa

2018
PMCID: 5876571
PMID: 29510496
DOI: 10.3390/vetsci5010026

[…] that msp1as could be utilised as a genetic marker for diversity analysis in a. centrale., both of our recent studies examining a. marginale and a. centrale in south africa [,] have used the program repeatanalyzer [] to identify, curate, map, and analyse msp1as (a. centrale) and msp1a repeats (a. marginale). these studies reveal the urgent need for a centralized online repeat genotype/strain […]

library_books

Co infections with multiple genotypes of Anaplasma marginale in cattle indicate pathogen diversity

2018
PMCID: 5753507
PMID: 29298712
DOI: 10.1186/s13071-017-2595-5

[…] fisher scientific). recombinant clones and amplicons were sequenced at inqaba biotechnical industries as described above., sequences were assembled and aligned using clc genomics workbench 7.5.1. repeatanalyzer [] was used to identify, curate, map and analyse msp1a repeats and a. marginale strains. new names (up1 to up36) were given to novel repeats that were not recognized by repeatanalyzer. […]


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RepeatAnalyzer institution(s)
School of Electrical Engineering and Computer Science, Washington State University, Pullman, WA, USA; Department of Veterinary Microbiology and Pathology, Washington State University, Pullman, WA, USA
RepeatAnalyzer funding source(s)
This work was supported by a start-up fund from the School of Electrical Engineering and Computer Science, Washington State University and, in its later stages, by NSF CAREER award IIS-1553528.

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