RepeatGluer statistics

Tool stats & trends

Looking to identify usage trends or leading experts?

RepeatGluer specifications


Unique identifier OMICS_21819
Name RepeatGluer
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability No
Maintained No


No version available


This tool is not available anymore.

Publication for RepeatGluer

RepeatGluer citations


Characterization of the past and current duplication activities in the human 22q11.2 region

BMC Genomics
PMCID: 3040729
PMID: 21269513
DOI: 10.1186/1471-2164-12-71

[…] outside of 22q11.2 were not included, as our goal was to study the intra-LCR22 duplications implicated in human disorders. The pair-wise alignment information of these SDs was provided to the program RepeatGluer [] for decomposing the 404 SDs into 523 non-overlapping duplication subunits. This approach is motivated by previous study [,]; a comparison of our subunits with those defined previously b […]


Identifying repeat domains in large genomes

Genome Biol
PMCID: 1431705
PMID: 16507140
DOI: 10.1186/gb-2006-7-1-r7

[…] repeat family libraries and directly reveals composite repeats. Repeat family libraries have historically been constructed via manual curation. Recently, algorithms such as RepeatFinder [], RECON [], RepeatGluer [], PILER [] and RepeatScout [] are increasingly automating the process of identifying repeat families from genomic sequence. For example, RECON has aided the construction of a library of […]


ReAS: Recovery of Ancestral Sequences for Transposable Elements from the Unassembled Reads of a Whole Genome Shotgun

PLoS Comput Biol
PMCID: 1232128
PMID: 16184192
DOI: 10.1371/journal.pcbi.0010043

[…] ed algorithms for detecting TEs. It relies on a comparison to known TEs from libraries like Repbase [], which represents many years of manual labor. Computational tools like REPuter [], RECON [], and RepeatGluer [] automate this process. However, almost all of the genomes sequenced today employ a whole genome shotgun (WGS) method that is incapable of assembling the most recent TEs, and any efforts […]


Looking to check out a full list of citations?

RepeatGluer institution(s)
Department of Computer Science and Engineering, University of California, San Diego,La Jolla, CA, USA; Department of Mathematics, University of California, San Diego,La Jolla, CA, USA
RepeatGluer funding source(s)
Supported by NHGRI grant 1 R01 HG02366.

RepeatGluer reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review RepeatGluer