RepeatModeler specifications

Information


Unique identifier OMICS_19729
Name RepeatModeler
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
License Open Software License v. 2.1
Computer skills Advanced
Version 1.0.10
Stability Stable
Requirements RepeatMasker & Libraries, RECON, RepeatScout, TRF, NSEG, RMBlast, ABBlast/WUBlast
Maintained Yes

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RepeatModeler citation

2018
PMCID: 5886536

[…] and combined with 548 repetitive sequences from the repbase database [42]. the repbase sequences originated from the salmoniformes family, and excluded simple repeats (downloaded january 13, 2017). repeatmodeler v1.0.8 [43] was also used together with the allpaths-lg initial assembly in a de novo approach, which identified 1,124 repetitive sequences., the repetitive sequences were then aligned […]

RepeatModeler funding source(s)
Supported by the NIH (R44 HG02244 and R01 HG002939) and the Institute for Systems Biology.

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