RepeatScout pipeline

RepeatScout specifications

Information


Unique identifier OMICS_03540
Name RepeatScout
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Computer skills Advanced
Version 1.0.5
Stability Stable
Maintained Yes

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Documentation


Publication for RepeatScout

RepeatScout citation

2016
PMCID: 4736629

[…] an abundant tandem repeat that accounts for more than 4 % of the whole teff genome., half a million paired-end reads representing 0.25× coverage of the e. tef genome were analyzed using repeatscout [39], a program that has proven effective in de novo identification of repeats. reads were assembled into consensus sequences using cap3 [40], and consensus sequences were clustered […]

RepeatScout institution(s)
Department of Computer Science and Engineering, University of California San Diego La Jolla, CA, USA

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