RepeatSoaker specifications

Information


Unique identifier OMICS_14820
Name RepeatSoaker
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A list of genomic coordinates of low complexity regions.
Input format BED,BAM
Output data A file with reads overlapping low complexity regions at a given threshold filtered out, the filtering statistics.
Output format BAM
Operating system Unix/Linux
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements
Bedtools
Maintained Yes

Download


Versioning


Add your version

Documentation


Maintainers


  • person_outline Mikhail Dozmorov <>
  • person_outline Jonathan Wren <>

Publication for RepeatSoaker

RepeatSoaker institution(s)
Department of Biostatistics, Virginia Commonwealth University, Richmond, VA, USA; Arthritis and Clinical Immunology, Oklahoma Medical Research Foundation, Oklahoma City, OK, USA; Immunobiology and Cancer Research Program, Oklahoma Medical Research Foundation, Oklahoma City, OK, USA; Reynolds Oklahoma Center on Aging, Donald W. Reynolds Department of Geriatric Medicine, University of Oklahoma Health Sciences Center, Oklahoma City, OK, USA; Department of Physiology, University of Oklahoma Health Sciences Center, Oklahoma City, OK, USA; Department of Biochemistry and Molecular Biology, University of Oklahoma Health Sciences Center, Oklahoma City, OK, USA
RepeatSoaker funding source(s)
Supported by the National Institute of Arthritis and Musculoskeletal and Skin Diseases (a subaward from grant # P30 AR053483), by an Institutional Development Award (IDeA) from the National Institute of General Medical Sciences (a subaward from grant # P30GM103510), by the National Center for Advancing Translational Sciences (CTSA award No. UL1TR000058), by NIH/NIGMS (P30GM110766, P20GM103456, P20GM103636), by NIH/NIAMS (R01AR065953, P50AR060804), and by the National Science Foundation division of Advanced CyberInfrastructure # ACI-1345426.

RepeatSoaker reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review RepeatSoaker