RepARK specifications

Information


Unique identifier OMICS_03446
Name Repetitive motif detection by Assembly of Repetitive K-mers
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data Input data can be one or more fasta or fastq files.
Output data The repeat consensuses can be found in the file repeat_lib.fasta within the working directory.
Operating system Unix/Linux
Computer skills Advanced
Version 1.3.0
Stability Stable
Requirements Jellyfish, Velvet, CLC Assembler
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Philipp Koch <>

RepARK article

RepARK institution(s)
Genome Analysis, Leibniz Institute for Age Research - Fritz Lipmann Institute, Jena, Germany
RepARK funding source(s)
Klaus Tschira Stiftung [00.179.2011]

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