repgenHMM statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

repgenHMM specifications


Unique identifier OMICS_11313
Name repgenHMM
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Yuval Elhati <>

Publication for repgenHMM

repgenHMM in publication

PMCID: 5500008
PMID: 28683116
DOI: 10.1371/journal.pcbi.1005572

[…] software tools: migec (, mixcr (, tcr ( and repgenhhm ( we processed raw sequencing data with migec [] to extract unique molecular identifiers and we used mixcr [] to determine the cdr3 position. all raw data is available online […]

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repgenHMM institution(s)
Laboratoire de physique théorique, UMR8549, CNRS and École normale supérieure, Paris, France; Laboratoire de physique statistique, UMR8550, CNRS and École normale supérieure, Paris, France
repgenHMM funding source(s)
This work was supported by European Research Council Starting Grant n. 306312.

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