RepPop specifications

Information


Unique identifier OMICS_28073
Name RepPop
Alternative name Repetitive elements in the Populus trichocarpa genome
Restrictions to use None
Community driven No
Data access Browse
User data submission Allowed
Version 1.6.0
Maintained Yes

Maintainers


  • person_outline Ying Xu
  • person_outline Fengfeng Zhou

Additional information


http://csbl.bmb.uga.edu/~ffzhou/RepPop/help.php

Publication for Repetitive elements in the Populus trichocarpa genome

RepPop citations

 (2)
library_books

Genome wide profiling of Populus small RNAs

2009
BMC Genomics
PMCID: 2811130
PMID: 20021695
DOI: 10.1186/1471-2164-10-620

[…] RepeatScout [] and Tandem Repeat Finder [] to perform de novo repeat identification. The consensus repeat library generated by RepeatModeler was then used with RepeatMasker. The data contained in the RepPop database [] were also used. All repeat runs performed have been made available at the PopGenIE web resource and can be visualised in the genome browser or downloaded from the ftp site. […]

library_books

Automated seeding of specialised wiki knowledgebases with BioKb

2009
BMC Bioinformatics
PMCID: 2753848
PMID: 19758431
DOI: 10.1186/1471-2105-10-291

[…] ting to have an impact in a number of scientific disciplines, fostering communication and collaboration between the members of a research community []. Some resources, such as AMYPdb [], miRDB [] and RepPop [] employ wiki technology as part of an interface to a conventional database system. The DOOR database [] integrates a wiki as a method of facilitating interaction between database users and de […]

RepPop institution(s)
Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, and Institute of Bioinformatics, University of Georgia, Athens, GA, USA; BioEnergy Science Center, Tennessee, USA
RepPop funding source(s)
Supported in part by the National Science Foundation (DBI0354771, ITR-IIS-0407204, DBI-0542119, CCF0621700), also National Institutes of Health (1R01GM075331 and 1R01GM081682) and a Distinguished Scholar grant from the Georgia Cancer Coalition, and the grant for the BioEnergy Science Center, which is a U.S. Department of Energy Bioenergy Research Center supported by the Office of Biological and Environmental Research in the DOE Office of Science.

RepPop reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review RepPop