RepPop specifications


Unique identifier OMICS_28073
Name RepPop
Alternative name Repetitive elements in the Populus trichocarpa genome
Restrictions to use None
Community driven No
Data access Browse
User data submission Allowed
Version 1.6.0
Maintained Yes


  • person_outline Ying Xu
  • person_outline Fengfeng Zhou

Additional information

Publication for Repetitive elements in the Populus trichocarpa genome

RepPop citations


Genome wide profiling of Populus small RNAs

BMC Genomics
PMCID: 2811130
PMID: 20021695
DOI: 10.1186/1471-2164-10-620

[…] RepeatScout [] and Tandem Repeat Finder [] to perform de novo repeat identification. The consensus repeat library generated by RepeatModeler was then used with RepeatMasker. The data contained in the RepPop database [] were also used. All repeat runs performed have been made available at the PopGenIE web resource and can be visualised in the genome browser or downloaded from the ftp site. […]


Automated seeding of specialised wiki knowledgebases with BioKb

BMC Bioinformatics
PMCID: 2753848
PMID: 19758431
DOI: 10.1186/1471-2105-10-291

[…] ting to have an impact in a number of scientific disciplines, fostering communication and collaboration between the members of a research community []. Some resources, such as AMYPdb [], miRDB [] and RepPop [] employ wiki technology as part of an interface to a conventional database system. The DOOR database [] integrates a wiki as a method of facilitating interaction between database users and de […]

RepPop institution(s)
Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, and Institute of Bioinformatics, University of Georgia, Athens, GA, USA; BioEnergy Science Center, Tennessee, USA
RepPop funding source(s)
Supported in part by the National Science Foundation (DBI0354771, ITR-IIS-0407204, DBI-0542119, CCF0621700), also National Institutes of Health (1R01GM075331 and 1R01GM081682) and a Distinguished Scholar grant from the Georgia Cancer Coalition, and the grant for the BioEnergy Science Center, which is a U.S. Department of Energy Bioenergy Research Center supported by the Office of Biological and Environmental Research in the DOE Office of Science.

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