reprDB specifications


Unique identifier OMICS_23660
Name reprDB
Restrictions to use None
Database management system NoSQL
Community driven No
Data access File download, Browse
User data submission Not allowed


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Publication for reprDB

reprDB citations


ReprDB and panDB: minimalist databases with maximal microbial representation

PMCID: 5774170
PMID: 29347966
DOI: 10.1186/s40168-018-0399-2

[…] many sequencing reads as possible with maximum efficiency and minimum computational cost. In this study, we described methods to efficiently and automatically compile two microbial genome databases, reprDB and panDB, both of which have manageable sizes and are suitable for analyzing mWGS data. The reference databases we compiled significantly promoted microbial species identification in human-ass […]


Prediction of protein long range contacts using an ensemble of genetic algorithm classifiers with sequence profile centers

BMC Struct Biol
PMCID: 2873825
PMID: 20487509
DOI: 10.1186/1472-6807-10-S1-S2

[…] We obtained the protein chain set from PDB-REPRDB [], which selects protein chains from PDB based on PDB Rel. 2007_11_14, and updated on 15 April 2009. We selected protein chains that are resolved by X-ray crystallography with resolution ≤2.0Å […]

reprDB institution(s)
The Jackson Laboratory for Genomic Medicine, Farmington, Connecticut, USA; Stanford University, Stanford, CA, USA
reprDB funding source(s)
Supported by National Institute of Health (K22 AI119231-01).

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