ReproPhylo specifications

Information


Unique identifier OMICS_11551
Name ReproPhylo
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
Computer skills Advanced
Version 1.2
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Amir Szitenberg <>

Publication for ReproPhylo

ReproPhylo in publication

PMCID: 5635653
PMID: 27566762
DOI: 10.1093/gbe/evw208

[…] analysis. since unbalanced taxon sampling may reduce the accuracy of the phylogenetic reconstruction (), we also included additional sequences from silva (), representing the diversity of nematoda. reprophylo 0.1 () was used to ensure the reproducibility of the phylogenetic workflow (, online). a secondary structure aware sequence alignment was conducted using sina 1.2 (), and the alignment […]


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ReproPhylo institution(s)
Evolutionary Biology Group, School of Biological, Biomedical & Environmental Sciences, The University of Hull, Hull, UK; Institute of Evolutionary Biology, The University of Edinburgh, Edinburgh, UK
ReproPhylo funding source(s)
The Science of the Environment Council grant NE/J011355/1 and R8/H10/56; The Medical Research Council grant G0900740

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