1. Directory
  3. Genomics
  5. Genome annotation
  7. Repetitive DNA
Join community Sign in
By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.
OMIC
03542

Repseek

An implementation of a two-steps method (seed detection followed by their extension) that detects those approximate repeats.

Specifications

Software type:
Package
Interface:
Command line interface
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS
License:
GNU General Public License version 2.0
Computer skills:
Advanced
Stability:
Stable
View all reviews

0 user review

No review has been posted.

View all issues

0 issue

No open issue.

Publications

  • (Achaz et al., 2007) Repseek, a tool to retrieve approximate repeats from large DNA sequences. Bioinformatics.
    PMID: 17038345

Classification

Literature

  • (Bergman and Quesneville, 2007) Discovering and detecting transposable elements in genome sequences. Briefings in bioinformatics.
    PMID: 17932080
  • (Anisimova et al., 2015) Statistical approaches to detecting and analyzing tandem repeats in genomic sequences. Frontiers in bioengineering and biotechnology.
    PMID: 25853125
  • (Saha et al., 2008) Empirical comparison of ab initio repeat finding programs. Nucleic acids research.
    PMID: 18287116
  • (Lerat, 2010) Identifying repeats and transposable elements in sequenced genomes: how to find your way through the dense forest of programs. Heredity.
    PMID: 19935826
  • (Janicki et al., 2011) Bioinformatics and genomic analysis of transposable elements in eukaryotic genomes. Chromosome research.
    PMID: 21850457

77 related tools

A CLAssifi…

OMIC_01528
A database dedicated to the collection and classification of mobile genetic…

BLASTER

OMIC_09441
Gathers C++ programs developed for transposable element search and their…

Bombyx mor…

OMIC_07693
A collective database of transposable elements (TEs) in the silkworm (Bombyx…

Buffalo Mi…

OMIC_05527
A web based relational database of microsatellite markers, developed using PHP…