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Publication for RepSeq
Vidjil: A Web Platform for Analysis of High Throughput Repertoire Sequencing
[…] atform is to give access to several algorithms and software. We already allow to process reads by either the Vidjil algorithm or MiXCR , that notably includes an error correcting method tailored to RepSeq data. We aim to package other open-source RepSeq algorithms through the platform. We also provide links to post-process selected clonotypes with IMGT/V-QUEST , IgBlast  or Blast . Such po […]
Trichomonas vaginalis vast BspA like gene family: evidence for functional diversity from structural organisation and transcriptomics
[…] sus approaches can provide better predictions . In order to investigate the potential presence of CAAX motif at the C-terminus in TvBspA-like proteins without TMD domains we used PrePS .SAPS [,], RepSeq  and REPTILE  analyses were performed to investigate the potential presence of repeats and their features (in addition to the TpLRR) and low complexity segments among TvBspA-like proteins.P […]
Transcriptome analysis of the Cryptocaryon irritans tomont stage identifies potential genes for the detection and control of cryptocaryonosis
[…] the N-terminal signal peptide and C-terminal GPI-anchor signal whereas Big-π and FragAnchor only predict the C-terminal GPI-anchor signal. The repeats in the UTs were identified using Reptile  and RepSeq . […]
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