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RepSeq specifications

Information


Unique identifier OMICS_10045
Name RepSeq
Restrictions to use None
Maintained No

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Publication for RepSeq

RepSeq citations

 (3)
library_books

Vidjil: A Web Platform for Analysis of High Throughput Repertoire Sequencing

2016
PLoS One
PMCID: 5106020
PMID: 27835690
DOI: 10.1371/journal.pone.0166126

[…] atform is to give access to several algorithms and software. We already allow to process reads by either the Vidjil algorithm or MiXCR [], that notably includes an error correcting method tailored to RepSeq data. We aim to package other open-source RepSeq algorithms through the platform. We also provide links to post-process selected clonotypes with IMGT/V-QUEST [], IgBlast [] or Blast []. Such po […]

library_books

Trichomonas vaginalis vast BspA like gene family: evidence for functional diversity from structural organisation and transcriptomics

2010
BMC Genomics
PMCID: 2843621
PMID: 20144183
DOI: 10.1186/1471-2164-11-99

[…] sus approaches can provide better predictions []. In order to investigate the potential presence of CAAX motif at the C-terminus in TvBspA-like proteins without TMD domains we used PrePS [].SAPS [,], RepSeq [] and REPTILE [] analyses were performed to investigate the potential presence of repeats and their features (in addition to the TpLRR) and low complexity segments among TvBspA-like proteins.P […]

library_books

Transcriptome analysis of the Cryptocaryon irritans tomont stage identifies potential genes for the detection and control of cryptocaryonosis

2010
BMC Genomics
PMCID: 2828411
PMID: 20113487
DOI: 10.1186/1471-2164-11-76

[…] the N-terminal signal peptide and C-terminal GPI-anchor signal whereas Big-π and FragAnchor only predict the C-terminal GPI-anchor signal. The repeats in the UTs were identified using Reptile [] and RepSeq []. […]

Citations

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RepSeq institution(s)
Immunology and Infection Unit, Department of Biology, University of York, Heslington, York, UK

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