Reptile specifications

Information


Unique identifier OMICS_10023
Name Reptile
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Protein sequence(s)
Operating system Unix/Linux
Programming languages C++
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Pascal Mäeser

Information


Unique identifier OMICS_10023
Name Reptile
Interface Web user interface
Restrictions to use None
Input data Protein sequence(s)
Programming languages C++
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Pascal Mäeser

Publication for Reptile

Reptile citations

 (2)
library_books

Trichomonas vaginalis vast BspA like gene family: evidence for functional diversity from structural organisation and transcriptomics

2010
BMC Genomics
PMCID: 2843621
PMID: 20144183
DOI: 10.1186/1471-2164-11-99

[…] can provide better predictions []. In order to investigate the potential presence of CAAX motif at the C-terminus in TvBspA-like proteins without TMD domains we used PrePS [].SAPS [,], RepSeq [] and REPTILE [] analyses were performed to investigate the potential presence of repeats and their features (in addition to the TpLRR) and low complexity segments among TvBspA-like proteins.Protein alignme […]

library_books

Transcriptome analysis of the Cryptocaryon irritans tomont stage identifies potential genes for the detection and control of cryptocaryonosis

2010
BMC Genomics
PMCID: 2828411
PMID: 20113487
DOI: 10.1186/1471-2164-11-76

[…] M predicts both the N-terminal signal peptide and C-terminal GPI-anchor signal whereas Big-π and FragAnchor only predict the C-terminal GPI-anchor signal. The repeats in the UTs were identified using Reptile [] and RepSeq []. […]

Reptile institution(s)
University of Bern, Institute of Cell Biology, Bern, Switzerland

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