Reptile pipeline

Reptile specifications

Information


Unique identifier OMICS_01109
Name Reptile
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.1
Stability No
Requirements Perl, GNU make, C++ compiler
Maintained No

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Publications for Reptile

Reptile IN pipeline

2017
PMCID: 5593202
PMID: 28892487
DOI: 10.1371/journal.pone.0183002

[…] pearsei sp. nov., with the addition of the directive tophred33, as the reads were produced by an earlier generation sequencing machine. during the error correction step, parameter values supplied to reptile were as follows: t_expgoodcnt of 10, t_card of 4, kmerlen of 13, qthreshold of 66, qlb of 58, maxbadqperkmer of 8 and step to 12, with all other settings at their defaults. for initial de […]

Reptile institution(s)
Computational Science Center IBM T. J. Watson Research, Cambridge, MA, USA; Georgia Institute of Technology, Atlanta, GA, USA; Georgia Institute of Technology, Atlanta, GA, USA
Reptile funding source(s)
A parallelized version is available at http://aluru-sun.ece.iastate.edu/lib/exe/fetch.php?media=source:reptile-omp.tar.bz2 Tutorial: http://aluru-sun.ece.iastate.edu/doku.php?id=reptile_tutorial

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