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Protocols

ResMap specifications

Information


Unique identifier OMICS_29447
Name ResMap
Alternative name Resolution Map
Software type Application/Script
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
Computer skills Advanced
Version 1.1.4
Stability Stable
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainer


  • person_outline Hemant Tagare

Additional information


https://sourceforge.net/projects/resmap/

Publication for Resolution Map

ResMap citations

 (168)
call_split

Structural basis for energy transduction by respiratory alternative complex III

2018
Nat Commun
PMCID: 5928083
PMID: 29712914
DOI: 10.1038/s41467-018-04141-8
call_split See protocol

[…] g was performed with Coot and real space refinement was performed in Phenix followed by manual rebuilding. MolProbity and EMRinger were used for model validation. Local resolution was estimated using ResMap. Figures were drawn with UCSF Chimera. […]

call_split

Cryo EM structure of the RC LH core complex from an early branching photosynthetic prokaryote

2018
Nat Commun
PMCID: 5908803
PMID: 29674684
DOI: 10.1038/s41467-018-03881-x
call_split See protocol

[…] pplying an empirically determined B-factor of −100 Å2. The values of angular distribution of particles from 3D refinement was visualized by UCSF Chimera. Local resolution variation was estimated with ResMap. […]

library_books

RPAP3 provides a flexible scaffold for coupling HSP90 to the human R2TP co chaperone complex

2018
Nat Commun
PMCID: 5902453
PMID: 29662061
DOI: 10.1038/s41467-018-03942-1

[…] ourier Shell Correlation (FSC) between two independent maps using cut-off of FSC = 0.143. B factor sharpening was performed using automatic procedures in Relion2. Local resolution was estimated using ResMap. Structures were visualized using UCSF Chimera. […]

call_split

Structural mechanism for nucleotide driven remodeling of the AAA ATPase unfoldase in the activated human 26S proteasome

2018
Nat Commun
PMCID: 5893597
PMID: 29636472
DOI: 10.1038/s41467-018-03785-w
call_split See protocol

[…] 4.1, and 4.8 Å, respectively. Prior to visualization, all density maps were sharpened by applying a negative B-factor (Supplementary Table 1). Local resolution variations were further estimated using ResMap on the two half-maps refined independently. […]

library_books

Cryo EM structure of the nucleosome containing the ALB1 enhancer DNA sequence

2018
Open Biol
PMCID: 5881032
PMID: 29563192
DOI: 10.1098/rsob.170255

[…] on (FSC) at FSC = 0.143 []. Maps were normalized with MAPMAN []. The model of 3LZ0.pdb was docked into the electron potential map of the ALB1 nucleosome reconstruction with UCSF Chimera []. The local resolution map of the ALB1 nucleosome was created by RESMAP []. Iso-electron potential surfaces were visualized with UCSF ChimeraX [] using the ambient occlusion shader (c) and UCSF Chimera [] (figure […]

call_split

Architecture of the Saccharomyces cerevisiae NuA4/TIP60 complex

2018
Nat Commun
PMCID: 5861120
PMID: 29559617
DOI: 10.1038/s41467-018-03504-5
call_split See protocol

[…] o resulting reconstructions were calculated at resolutions of 4.68 Å and 7.64 Å based on the gold-standard fourier shell correlation (FSC) 0.143 criterion. Local resolution maps were calculated using ResMap. All the 3D structures were displayed by Chimera. […]

Citations

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ResMap institution(s)
Department of Biomedical Engineering, Yale University, New Haven, CT, USA; Department of Cellular and Molecular Physiology, Yale University, New Haven, CT, USA; Department of Diagnostic Radiology, Yale University, New Haven, CT, USA
ResMap funding source(s)
Supported by NSERC award PGS-D3, and NIH grants R01LM010142, R01GM095658, and R01NS021501.

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