RetrogeneDB specifications

Information


Unique identifier OMICS_15242
Name RetrogeneDB
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes

Documentation


Maintainer


  • person_outline Izabela Makalowska

Publication for RetrogeneDB

RetrogeneDB citations

 (2)
library_books

Protein Coding Genes’ Retrocopies and Their Functions

2017
Viruses
PMCID: 5408686
PMID: 28406439
DOI: 10.3390/v9040080

[…] specific databases available. The first, HOPPSIGEN, is focused on human and mouse genomes []. A wider range of retrocopies, identified in six primate genomes, is available in RCPedia []. In addition, RetrogeneDB2 stores retrocopy information for 62 animal and 37 plant species []. Moreover, this database includes expression validation based not only on RNA-seq experiments but also on expressed sequ […]

library_books

Inter population Differences in Retrogene Loss and Expression in Humans

2015
PLoS Genet
PMCID: 4608704
PMID: 26474060
DOI: 10.1371/journal.pgen.1005579

[…] The set of human retrocopies generated by us from the RetrogeneDB database [] was used for the identification of RDVs from known retrocopies. Sequence variants detected for 1,092 individuals during Phase 1 of the 1000 Genomes Project [] were downloaded a […]

RetrogeneDB institution(s)
Labolatory of Bioinformatics, Faculty of Biology, Adam Mickiewicz University, Poznan, Poland,Labolatory of Bioinformatics, Faculty of Biology, Adam Mickiewicz University, Poznan, Poland,Labolatory of Bioinformatics, Faculty of Biology, Adam Mickiewicz University, Poznan, Poland
RetrogeneDB funding source(s)
This work was supported by the National Science Centre of Poland grant number 2013/09/N/NZ2/01221, grant number 2011/01/N/NZ2/01701 and European Union grant PIRSES-GA-2009-247633.

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