RetroPred specifications

Information


Unique identifier OMICS_15034
Name RetroPred
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data The genomic sequence.
Input format FASTA
Output data A graphical representation of the entire chromosome, the location of LINEs and SINEs in the genome.
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Maintainer


  • person_outline Pradeep Kumar Naik <>

Publication for RetroPred

RetroPred in publication

PMCID: 4705060
PMID: 26743769
DOI: 10.1186/s12284-015-0073-2

[…] such as elucidation of intronless genes (jain et al. ) and prediction of mirna targets (archak and nagaraju ). various tools have been developed and validated using rice genome sequence, such as retropred for prediction of non-ltr retrotransposons (naik et al. ), a machine learning tool to predict infection by rice blast fungus depending on the weather conditions (kaundal et al. ), […]


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RetroPred institution(s)
Department of Biotechnology and Bioinformatics, Jaypee University of Information Technology, Waknaghat, India

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