RetroSeq specifications

Unique identifier:
OMICS_00120
Interface:
Command line interface
Output data:
Transposable element calls
Operating system:
Unix/Linux
Stability:
Stable
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Output format:
VCF
Computer skills:
Advanced
Requirements:
Bedtools, samtools, Exonerate

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

RetroSeq support

Documentation

Maintainer

  • Thomas M. Keane <>

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK

Funding source(s)

This work was supported by the Medical Research Council, UK and the Wellcome Trust.

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community
Sort by:

1 user review

star_border star_border star_border star_border star_border
star star star star star

1 user review

star_border star_border star_border star_border star_border
star star star star star
Daniel's avatar image

Daniel

star_border star_border star_border star_border star_border
star star star star star

RetroSeq is user friendly and fairly fast. In my experience, it mapped mobile element insertions (MEI) within 100-200 bp of the actual site.

Related Tools