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Reverse ecology analysis software tools | Population genomics

Reverse ecology has been developed to study the complex interactions and species composition of microbial communities. Reverse ecology uses genomics to study community ecology with no a priori assumptions about the organisms under consideration.…
G T A T C G C T A
RevEcoR
Desktop

RevEcoR

An R package and a Shiny Web application that implements the reverse ecology…

An R package and a Shiny Web application that implements the reverse ecology algorithm for determining microbe–microbe interactions in microbial communities. RevEcoR allows users to obtain…

NetCooperate
Desktop
Web

NetCooperate

A package for determining host-microbe and microbe-microbe cooperative…

A package for determining host-microbe and microbe-microbe cooperative potential. NetCooperate specifically calculates two previously developed and validated metrics for species interaction: the…

NetCmpt
Desktop
Web

NetCmpt

A tool for calculating the competitive potential between pairs of bacterial…

A tool for calculating the competitive potential between pairs of bacterial species. The score describes the effective metabolic overlap (EMO) between two species, derived from analyzing the topology…

NetSeed
Web

NetSeed

A web tool for analyzing the topology of metabolic networks and calculating the…

A web tool for analyzing the topology of metabolic networks and calculating the set of exogenously acquired compounds. NetSeed is based on the seed detection algorithm, that allows for the…

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