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Reverse phase protein array data analysis bioinformatics software tools

Reverse phase protein array (RPPA) technology, first described in 2001, allows simultaneous measurement of numerous glycosylated, phosphorylated, cleaved, or total cellular proteins from complex mixtures in many samples at once. RPPA is considerably…
RPPanalyzer
Desktop

RPPanalyzer

A statistical tool developed to read reverse-phase protein array data, to…

A statistical tool developed to read reverse-phase protein array data, to perform the basic data analysis and to visualize the resulting biological information. The R-package provides different…

NormaCurve
Desktop

NormaCurve

Allows to simultaneously quantify and normalize Reverse Phase Protein Arrays…

Allows to simultaneously quantify and normalize Reverse Phase Protein Arrays (RPPAs). NormaCurve is a normalization model that considers the two control arrays ctrl and sypro, as well as the two…

A robust…
Desktop

A robust classifier for quality control of reverse-phase protein arrays

A classifier for quality control of RPPA experiments using a generalized linear…

A classifier for quality control of RPPA experiments using a generalized linear model and logistic function. The outcome of the classifier, ranging from 0 to 1, is defined as the probability that a…

MIRACLE
Desktop
Web

MIRACLE

A comprehensive and user-friendly web application bridging the gap between…

A comprehensive and user-friendly web application bridging the gap between spotting and array analysis by conveniently keeping track of sample information. Data processing includes correction of…

RPPA Preprocess
Desktop

RPPA Preprocess Reverse Phase Protein Arrays Preprocess

A method for the determination and correction of systematic spatial variation…

A method for the determination and correction of systematic spatial variation in reverse phase protein arrays (RPPA) slides using positive control spots printed on each slide. RPPA Preprocess uses a…

RPPApipe
Web

RPPApipe

Offers predefined and custom-built workflows for the preprocessing, annotation,…

Offers predefined and custom-built workflows for the preprocessing, annotation, statistical analysis, clustering, pathway analysis and visualization of Reverse-Phase Protein Array (RPPA) data.

SuperCurve
Desktop

SuperCurve

A stand-alone package that provides tools for the analysis of reverse phase…

A stand-alone package that provides tools for the analysis of reverse phase protein arrays.

MicroVigene
Desktop

MicroVigene

An image analysis software suitable for any array based image application.

An image analysis software suitable for any array based image application.

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