ReviSeq specifications

Information


Unique identifier OMICS_14686
Name ReviSeq
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.1.2
Stability Stable
Maintained Yes

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Versioning


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Maintainer


  • person_outline Harold Garner

Publication for ReviSeq

ReviSeq citation

library_books

Whole genome assembly of Akkermansia muciniphila sequenced directly from human stool

2015
Biol Direct
PMCID: 4333879
PMID: 25888298
DOI: 10.1186/s13062-015-0041-1

[…] sing several tools. The assembly step was conducted using Newbler 2.8 [] and Mira 3.2 []. The contigs obtained were combined by Cisa to reduce the set []. The contig mapping step was carried out with ReviSeq algorithm (under development, unpublished). Finally, finishing was performed using Gapfiller and CLC Genomics. The genome obtained using this method contained a single 2.72 Mb chromosome witho […]

ReviSeq institution(s)
Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, VA, USA; Texas Animal Health Commission, State-Federal Diagnostic Laboratory, Austin, TX, USA; Department of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, TX, USA
ReviSeq funding source(s)
This work was supported by the Medical Informatics and Systems Division director's funds; the U.S. Department of Homeland Security through the National Center of Excellence for Foreign Animal and Zoonotic Disease Defense at Texas A&M University [subaward 570636 from DHS 2007-ST-061-000002]; and the National Institute of Health, National Human Genome Research Institute, 1000 Genomes Project Dataset Analysis Grant [grant number 1U01HG-005719-01].

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