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RF-Fold specifications

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Unique identifier OMICS_10828
Name RF-Fold
Interface Web user interface
Restrictions to use None
Input data Plain protein sequence
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


Publication for RF-Fold

RF-Fold citations

 (2)
library_books

In vivo probing of nascent RNA structures reveals principles of cotranscriptional folding

2017
PMCID: 5766169
PMID: 28934475
DOI: 10.1093/nar/gkx617

[…] 50 -nw 50 -wo 25). the rf-norm tool generates a xml file for each transcript (or for each transcription intermediate/decile in the case of spet-seq data). xml files for mature rna were passed to the rf-fold tool of the rna framework (using viennarna package 2.2 with soft constraints ()) to infer mature rna structures (parameters: -md 600 -nlp)., to identify regions undergoing structural changes, […]

library_books

Adaptive local learning in sampling based motion planning for protein folding

2016
PMCID: 4977477
PMID: 27490494
DOI: 10.1186/s12918-016-0297-9

[…] problem is defined as a binary classification problem of predicting whether or not the unknown fold of the input protein is similar to an already known template from a protein structure library., rf-fold uses random forests, a highly scalable classification method, to recognize protein folds []. a random forest is composed of many decision trees that are each trained on datasets […]


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RF-Fold institution(s)
Department of Computer Science, Informatics Institute, C Bond Life Science Center, University of Missouri, Columbia, MO, USA
RF-Fold funding source(s)
The work was partially supported by an NIH grant (R01GM093123).

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