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Coiled-coil oligomerization state prediction
Coiled-coil domain prediction
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RFCoil specifications
Information
| Unique identifier | OMICS_09326 |
|---|---|
| Name | RFCoil |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | Academic or non-commercial use |
| Input data | Protein sequence (RAW format) and sequence of coiled coil register (a sequence of "a", "b", "c", "d", "e", "f" and "g") |
| Output data | Predicted probability to be parallel dimeric and trimeric coiled-coil |
| Operating system | Unix/Linux |
| Computer skills | Advanced |
| Stability | No |
| Maintained | No |
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Maintainer
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Information
| Unique identifier | OMICS_09326 |
|---|---|
| Name | RFCoil |
| Interface | Web user interface |
| Restrictions to use | Academic or non-commercial use |
| Input data | Protein sequence (RAW format) and sequence of coiled coil register (a sequence of "a", "b", "c", "d", "e", "f" and "g") |
| Output data | Predicted probability to be parallel dimeric and trimeric coiled-coil |
| Computer skills | Basic |
| Stability | No |
| Maintained | No |
Maintainer
This tool is not available anymore.
Publication for RFCoil
library_books
Computational characterization of parallel dimeric and trimeric coiled-coils using effective amino acid indices.
2015 Mol Biosyst
PMID: 25435395
RFCoil in publication
library_books
Self sorting heterodimeric coiled coil peptides with defined and tuneable self assembly properties
PMCID: 4570195
PMID: 26370878
DOI: 10.1038/srep14063
[…] all ratios (). this confirmed that all four peptide combinations primarily associate in a 1:1 ratio. formation of dimers was verified using several predictive analysing tools, including logicoil, rfcoil, and procoil., formation of transient or less stable oligomers can however not be fully excluded but md simulations further supported formation of stable parallel heterodimers for all peptides […]
RFCoil institution(s)
Department of Biochemistry and Molecular Biology, Faculty of Medicine, Monash University, Melbourne, Australia; State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, China; School of Mathematics and Computer Science, Shanxi Normal University, Linfen, China; National Engineering Laboratory for Industrial Enzymes and Key Laboratory of Systems Microbial Biotechnology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China
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