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Rfoot specifications


Unique identifier OMICS_20324
Name Rfoot
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 0.1
Stability Stable
Maintained Yes


No version available

Publication for Rfoot

Rfoot citation


Insights into the mechanisms of eukaryotic translation gained with ribosome profiling

Nucleic Acids Res
PMCID: 5314775
PMID: 27923997
DOI: 10.1093/nar/gkw1190

[…] ), and for the prediction of translated ORFs (RiboTaper (), ORF-Rator () and riboHMM ()). Ribomap () estimates footprint origins in the presence of multiple splice isoforms and repetitive regions and Rfoot () uses RiboSeq data to predict non-ribosome protected RNA sites. Additional RiboSeq specific pipelines include PROTEOFORMER () and RiboProfiling ().While the use of ribosome profiling has been […]

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Rfoot institution(s)
Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA; Broad Institute of MIT and Harvard, Cambridge, MA, USA; Analytic and Translation Genetics Unit, Massachusetts General Hospital, Boston, MA, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA; Howard Hughes Medical Institute, MD, USA
Rfoot funding source(s)
Supported by grants from the National Institutes of Health (CA 107486).

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