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Rfoot specifications

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Unique identifier OMICS_20324
Name Rfoot
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 0.1
Stability Stable
Maintained Yes

Versioning


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Publication for Rfoot

Rfoot citation

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Insights into the mechanisms of eukaryotic translation gained with ribosome profiling

2016
Nucleic Acids Res
PMCID: 5314775
PMID: 27923997
DOI: 10.1093/nar/gkw1190

[…] ), and for the prediction of translated ORFs (RiboTaper (), ORF-Rator () and riboHMM ()). Ribomap () estimates footprint origins in the presence of multiple splice isoforms and repetitive regions and Rfoot () uses RiboSeq data to predict non-ribosome protected RNA sites. Additional RiboSeq specific pipelines include PROTEOFORMER () and RiboProfiling ().While the use of ribosome profiling has been […]


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Rfoot institution(s)
Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA; Broad Institute of MIT and Harvard, Cambridge, MA, USA; Analytic and Translation Genetics Unit, Massachusetts General Hospital, Boston, MA, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA; Howard Hughes Medical Institute, MD, USA
Rfoot funding source(s)
Supported by grants from the National Institutes of Health (CA 107486).

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