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RGG specifications

Information


Unique identifier OMICS_25325
Name RGG
Alternative names R GUI Generator, RGGRunner
Software type Framework/Library, Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java, R
License GNU Lesser General Public License version 3.0
Computer skills Medium
Stability Stable
Requirements
JGR
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainers


  • person_outline Albert Kriegner
  • person_outline Ilhami Visne
  • person_outline Erkan Dilaveroglu
  • person_outline Klemens Vierlinger
  • person_outline Martin Lauss

Additional information


http://rgg.r-forge.r-project.org/docs.html

Publication for R GUI Generator

RGG citations

 (6)
library_books

An emerging zoonotic clone in the Netherlands provides clues to virulence and zoonotic potential of Streptococcus suis

2016
Sci Rep
PMCID: 4933891
PMID: 27381348
DOI: 10.1038/srep28984

[…] this separation encoded for 7 virulence factors, including a capsular polysaccharide biosynthesis gene (cps2F), an N-acetylneuraminic acid synthetase (neuB), an extracellular protein factor (epf), an Rgg-like transcriptional regulator, an ABC-type multidrug transport system, suilysin (sly) and endo-β-N-acetylglucosaminidase D (). Both BAPS groups 4 and 6 consisted of all but one of the serotype 2 […]

library_books

Stress granules are dispensable for mRNA stabilization during cellular stress

2014
Nucleic Acids Res
PMCID: 4344486
PMID: 25488811
DOI: 10.1093/nar/gku1275

[…] at S149 as well as RNA binding (). Accordingly, we investigated whether the association of IGF2BP1 and G3BP1 is modulated via the acidic domain comprising S149, involves the RRM and/or the C-terminal RGG domain (Figure ). To this end, GFP-tagged wild-type and mutant G3BP1 proteins were probed for association with IGF2BP1 by co-immunoprecipitation (Figure ). G3BP1 and the non-phosphorylatable G3BP1 […]

library_books

BIFI: a Taverna plugin for a simplified and user friendly workflow platform

2014
BMC Res Notes
PMCID: 4228112
PMID: 25332013
DOI: 10.1186/1756-0500-7-740

[…] ser-friendly interface for workflow execution setup. See Figures  and for an example.Figure 3Figure 4This approach offers a great advantage in generating user interfaces, as we have experienced with R GUI Generator (RGG), a software tool which enables the easy generation of graphical user interfaces for the programming language R by adding a few Extensible Markup Language (XML) tags [].The Galaxy […]

call_split

Monitoring of Technical Variation in Quantitative High Throughput Datasets

2013
Cancer Inform
PMCID: 3785384
PMID: 24092958
DOI: 10.4137/CIN.S12862
call_split See protocol

[…] N. The package runs in R 2.15 or higher, and requires amap, gplots, and impute packages. A Windows software for swamp is freely available at http://co.bmc.lu.se/swamp/. The software is implemented in RGG language, and requires R 2.15 or higher and Java. […]

library_books

Structure of the Arginine Methyltransferase PRMT5 MEP50 Reveals a Mechanism for Substrate Specificity

2013
PLoS One
PMCID: 3581573
PMID: 23451136
DOI: 10.1371/journal.pone.0057008

[…] t we propose are involved in substrate interaction. Furthermore, the electrostatic surface features of this cross-dimer pair are appropriate for the recognition of positively-charged substrates (e.g. RGG or GRGK motifs) (). The position of the catalytic site in the cross-dimer pair model is illustrated in .The invariant “double-E” loop is found in all arginine methyltransferases and is absolutely […]

call_split

Open Source Tracking and Analysis of Adult Drosophila Locomotion in Buridan's Paradigm with and without Visual Targets

2012
PLoS One
PMCID: 3415391
PMID: 22912692
DOI: 10.1371/journal.pone.0042247
call_split See protocol

[…] CeTrAn, the analysis software, is written in the open source statistics package R (http://r-project.org) and can be used without computing knowledge thanks to a user-friendly interface written in RGG (R Graphical user interface Generator, http://rgg.r-forge.r-project.org). This interface allows the user to set different variables and to browse the disk to find the location of the three relevan […]

Citations

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RGG institution(s)
Austrian Research Centers GmbH – ARC, Molecular Diagnostics, Seibersdorf, Austria; Institut für Statistik, LudwigMaximilians-Universität, München, Germany
RGG funding source(s)
Supported by the Austrian Research Centers GmbH-ARC.

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