Performs regulatory network reconstruction applied to Rhodobacter sphaeroides. Rhodobase provides tools for transcriptome meta-analysis, regulatory network visualization and optimized cross-species transcription factor binding sites (TFBS) matching. The software also allows user to choose the desired network complexity level. The platform furnishes a network visualization engine and a search engine for TFBS analysis.
Department of Molecular Biology, University of Wyoming, Laramie, WY, USA; Department of Biophysics, Faculty of Physics, Moscow State University, Moscow, Russia
Rhodobase funding source(s)
Supported in part by the United States Department of Agriculture Cooperative State Research, Education, Extension and Service grant, Global Perspectives travel grants from University of Wyoming College of Agriculture and Natural Resources, and Summer Bioinformatics Scholarship from Wyoming INBRE.