Ribbon specifications

Information


Unique identifier OMICS_13294
Name Ribbon
Interface Web user interface
Restrictions to use None
Input data Genomic alignments of short/long reads, assembled contigs to any reference genome
Input format SAM, BAM, coordinate files from whole genome aligners
Output data Alignments visualization from the perspective of both the reference and the read or query
License MIT License
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Maria Nattestad

Information


Unique identifier OMICS_13294
Name Ribbon
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input data Genomic alignments of short/long reads, assembled contigs to any reference genome
Input format SAM, BAM, coordinate files from whole genome aligners
Output data Alignments visualization from the perspective of both the reference and the read or query
Operating system Unix/Linux, Mac OS, Windows
License MIT License
Computer skills Medium
Stability Stable
Requirements
XAMPP, web browser
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainer


  • person_outline Maria Nattestad

Publication for Ribbon

Ribbon institution(s)
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA; Pacific Biosciences, Menlo Park, CA, USA; Departments of Computer, Science and Biology, Johns Hopkins University, Baltimore, MD, USA
Ribbon funding source(s)
This work was supported by NSF[DBI-1350041]; NHGRI[R01-HG006677].

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