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RIBBONS specifications

Information


Unique identifier OMICS_27285
Name RIBBONS
Software type Application/Script
Interface Graphical user interface
Restrictions to use License purchase required
Input format PDB
Output format VRML
Computer skills Medium
Version 2.7
Stability Stable
Registration required Yes
Maintained Yes

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Documentation


Maintainer


  • person_outline Mike Carson <>

Additional information


http://www.csb.yale.edu/userguides/graphics/ribbons/ribbons_descrip.html

Publications for RIBBONS

library_books

Ribbons.

1997 Methods Enzymol
PMID: 18488321
library_books

Ribbons 2.0

J Appl Crystallogr
DOI: 10.1107/S0021889891007240

RIBBONS in pipeline

2012
PMCID: 3575834
PMID: 23275567
DOI: 10.1093/nar/gks1303

[…] r-factor of 25.6% and free r-factor of 28.9% using the complete range of collected data to better than 3.7 å of resolution. refinement statistics are summarized in . all figures were generated in ribbons () or pymol ()., to align the local dyad of dimeric ab subunits to a given specific axis such as the x-axis, a rotated a′ and b′ were generated from a and b using the 2-fold crystallographic […]

RIBBONS in publications

 (208)
PMCID: 5859089
PMID: 29593513
DOI: 10.3389/fnbeh.2018.00053

[…] red–green cones (larison and bremiller, )., because per2 mutant larvae displayed a light-on vmr defect, we investigated whether this visual defect in mutants was the result of abnormal synaptic ribbons (allwardt et al., ). retinas were studied by electron microscopy at zt5, which was the time at which the visual function was obviously defected (figure ). compared with the wt retina, […]

PMCID: 5880510
PMID: 29516716
DOI: 10.1021/acsami.8b01116

[…] confinement of charge carriers. this allows proper switching behavior if gnrs are used as a channel material in field effect transistors (gnr-fets). in particular, the bandgap in armchair-edged ribbons is roughly inversely proportional to the nanoribbon width (eg ∼ 1/w),,, so that sub-5 nm ribbons will be required for field effect transistors. the semiconducting nature […]

PMCID: 5872961
PMID: 29510571
DOI: 10.3390/ma11030382

[…] of gnrs functionalized with triphenylene-based discotic liquid crystal through silane conjugation [] (). the π–π interaction of triphenylene unit enhance the self-assembly dlc-gnrs form ribbons of several length. further, compared with tem images of ods-coated gnrs with dlc-gnrs as shown in . the tem images obtained for dlc-gnrs composites as shown in . the image a and corresponding […]

PMCID: 5830783
PMID: 29515894
DOI: 10.1098/rsos.171962

[…] moreover, those techniques are, in general, not adequate to process soft elastic materials. here, we introduce a new concept of forming 3d closed hollow shapes from two-dimensional (2d) elastic ribbons by controlled buckling. we numerically and experimentally characterize how the profile and thickness of the ribbon determine its buckled shape. we find a 2d master profile with which various […]

RIBBONS institution(s)
University of Alabama at Birmingham, Birmingham, AL, USA
RIBBONS funding source(s)
Supported by a CMC NASA grant.

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