RiboGalaxy statistics

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Citations per year

Number of citations per year for the bioinformatics software tool RiboGalaxy

Tool usage distribution map

This map represents all the scientific publications referring to RiboGalaxy per scientific context
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RiboGalaxy specifications


Unique identifier OMICS_11201
Name RiboGalaxy
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes



  • person_outline Pavel Baranov

Publication for RiboGalaxy

RiboGalaxy citations


Ribosome profiling uncovers selective mRNA translation associated with eIF2 phosphorylation in erythroid progenitors

PLoS One
PMCID: 5892948
PMID: 29634759
DOI: 10.1371/journal.pone.0193790

[…] njamini-Hochberg (FDR) at a threshold of 5%.For UCSC browser snapshots we visualised the peak at the first nucleotide of the RFP and the sum of all three replicates. For metagene analysis we used the RiboGalaxy webtool []. […]


RNA editing by ADAR1 leads to context dependent transcriptome wide changes in RNA secondary structure

Nat Commun
PMCID: 5682290
PMID: 29129909
DOI: 10.1038/s41467-017-01458-8

[…] D∕Normalizedreadcountcontrol 4TE = NormalizedreadcountRibo-seq∕NormalizedreadcountRNA - seq 5TER = TEKD∕TEcontrol= FCRibo-seq∕FCRNA-seq Ribosome occupancy was calculated using the GWIPS-viz method in Ribogalaxy Meta-gene analysis was done in the span of 150 bases upstream/downstream to translation start/stop sites. […]


riboviz: analysis and visualization of ribosome profiling datasets

BMC Bioinformatics
PMCID: 5657068
PMID: 29070028
DOI: 10.1186/s12859-017-1873-8

[…] sed codon usage, presence of poly-basic amino-acids, and protein-domain architecture affect the distribution of footprinting reads along a transcript []. Recently, several tools such as GWIPS-viz [], RiboGalaxy [], and RPFdb [] have been developed for both analysis and visualization of ribosome-profiling datasets. While GWIPS-viz and RPFdb use unified pipelines for processing and mapping footprint […]


Small RNA profiling in Chlamydomonas: insights into chloroplast RNA metabolism

Nucleic Acids Res
PMCID: 5737564
PMID: 28985404
DOI: 10.1093/nar/gkx668

[…] PM) or reads Per Kilobase of transcript per Million mapped reads (RPKM) (). Differential expression analysis was performed with the EdgeR package (). The three-nt periodicity was determined using the RiboGalaxy tools (). Raw datasets were deposited in the Short Read Archive (SRA) database as part of BioProject PRJNA379963. Finally, 313 bi-directional WTSS datasets of C. reinhardtii were collected […]


Insights into the mechanisms of eukaryotic translation gained with ribosome profiling

Nucleic Acids Res
PMCID: 5314775
PMID: 27923997
DOI: 10.1093/nar/gkw1190

[…] spectrum of computational resources. At RiboSeq.Org, GWIPS-viz (,) provides visualizations of genomic alignments for publicly available RiboSeq data aligned to the genomes of a dozen of organisms and RiboGalaxy () allows researchers to analyse their data on a cloud server via an internet browser using a variety of tools from such packages as RUST (), riboSeqR () and RiboTools (). Publicly availabl […]

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RiboGalaxy institution(s)
School of Biochemistry & Cell Biology, University College Cork, Cork, Ireland

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