RiboGalaxy protocols

View RiboGalaxy computational protocol

RiboGalaxy statistics

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Tool usage distribution map

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Associated diseases

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RiboGalaxy specifications

Information


Unique identifier OMICS_11201
Name RiboGalaxy
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Pavel Baranov <>

Publication for RiboGalaxy

RiboGalaxy in pipeline

2017
PMCID: 5682290
PMID: 29129909
DOI: 10.1038/s41467-017-01458-8

[…] = fc}}_{{\mathrm{ribo - seq}}}{\mathrm{/fc}}_{{\mathrm{rna - seq}}}$$\end{document}ter = tekd∕tecontrol= fcribo-seq∕fcrna-seq , ribosome occupancy was calculated using the gwips-viz method in ribogalaxy meta-gene analysis was done in the span of 150 bases upstream/downstream to translation start/stop sites., known rna-editing sites were examined in the bowtie2 alignment files based […]


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RiboGalaxy in publications

 (3)
PMCID: 5892948
PMID: 29634759
DOI: 10.1371/journal.pone.0193790

[…] (fdr) at a threshold of 5%., for ucsc browser snapshots we visualised the peak at the first nucleotide of the rfp and the sum of all three replicates. for metagene analysis we used the ribogalaxy webtool []., to evaluate the effect of eif2 phosphorylation on mrna translation in erythroblasts we aimed for a rapid induction of eif2 phosphorylation that minimalizes secondary effects […]

PMCID: 5682290
PMID: 29129909
DOI: 10.1038/s41467-017-01458-8

[…] = fc}}_{{\mathrm{ribo - seq}}}{\mathrm{/fc}}_{{\mathrm{rna - seq}}}$$\end{document}ter = tekd∕tecontrol= fcribo-seq∕fcrna-seq , ribosome occupancy was calculated using the gwips-viz method in ribogalaxy meta-gene analysis was done in the span of 150 bases upstream/downstream to translation start/stop sites., known rna-editing sites were examined in the bowtie2 alignment files based […]

PMCID: 5314775
PMID: 27923997
DOI: 10.1093/nar/gkw1190

[…] of computational resources. at riboseq.org, gwips-viz (,) provides visualizations of genomic alignments for publicly available riboseq data aligned to the genomes of a dozen of organisms and ribogalaxy () allows researchers to analyse their data on a cloud server via an internet browser using a variety of tools from such packages as rust (), riboseqr () and ribotools (). publicly […]


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RiboGalaxy institution(s)
School of Biochemistry & Cell Biology, University College Cork, Cork, Ireland

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