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RDP | The ribosomal RNA database project

Provides aligned and annotated ribosomal RNA (rRNA) gene sequence data, along with tools to allow researchers to analyse their own rRNA gene sequences. RDP offers tools for browsing and searching the data collections, for taxonomic classification and nearest neighbour search, for primer-probe testing and for tree building. RDP data and tools are utilized in fields as diverse as human health, microbial ecology, environmental microbiology, nucleic acid chemistry, taxonomy and phylogenetics.

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1 user review

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Jakub Mrazek's avatar image Jakub Mrazek's country flag

Jakub Mrazek

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good combination of annotated rRNA genes along with tools.

RDP forum

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RDP classification

RDP specifications

Unique identifier:
OMICS_01513
Interface:
Web user interface
Computer skills:
Basic
Maintained:
Yes
Name:
Ribosomal Database Project
Restrictions to use:
None
Stability:
Stable

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No review has been posted.

RDP forum

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No open topic.

RDP classification

RDP specifications

Unique identifier:
OMICS_01513
Software type:
Pipeline/Workflow
Restrictions to use:
None
Computer skills:
Advanced
Stability:
Stable
Name:
Ribosomal Database Project
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS
Version:
2.0.2

RDP distribution

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RDP support

Maintainer

  • RDP Team <>
This tool is not maintained anymore.

Credits

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Publications

Institution(s)

Center for Microbial Ecology, Michigan State University, East Lansing, MI, USA; Computer Science and Engineering, Michigan State University, East Lansing, MI, USA; Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, USA; BiologicalSciences, Western Illinois University, Malcomb, IL, USA; Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM, USA

Funding source(s)

Supported by Office of Science (Biological and Environmental Research), US Department of Energy [DE-FG02- 99ER62848], the Office of Science (Biological and Environmental Research), US Department of Energy [DE-SC0004601], Bioenergy Center [DE-FC02-07ER64494], the US National Institute of Environmental Health Sciences Superfund Research Program [P42 ES004911], the National Science Foundation [DBI-0328255], the US Department of Agriculture National Institute of Food and Agriculture National Research Initiative [2008-35107-04542], the National Institute of Health Research Project [U01 HL098961] and Human Microbiome Project Demonstration Project [UH3 DK083993].

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