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Ribosomal gene prediction software tools | Shotgun metagenomic sequencing data analysis

Identification of genes coding for ribosomal RNA (rRNA) is considered an important goal in the analysis of data from metagenomics projects.Source text:(Huang et al., 2009) Identification of ribosomal RNA genes in metagenomic fragments.…
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Barrnap
Desktop

Barrnap BAsic Rapid Ribosomal RNA Predictor

A package which predicts the location of ribosomal RNA genes in genomes.…

A package which predicts the location of ribosomal RNA genes in genomes. Barrnap supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S).…

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meta_rna
Desktop

meta_rna

A software program designed for the identification of ribosomal RNA (rRNA)…

A software program designed for the identification of ribosomal RNA (rRNA) genes from metagenomic fragments based on hidden Markov models (HMMs). meta_rna provides rRNA gene predictions with high…

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i-rDNA
Web

i-rDNA

Facilitates the rapid detection of 16S rDNA fragments from amongst millions of…

Facilitates the rapid detection of 16S rDNA fragments from amongst millions of sequences in metagenomic data sets with high detection sensitivity. Performance evaluation with data sets/database…

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