riboviz specifications

Information


Unique identifier OMICS_14872
Name riboviz
Interface Web user interface
Restrictions to use None
Programming languages Javascript, R
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Oana Carja <>

Information


Unique identifier OMICS_14872
Name riboviz
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format FASTQ
Operating system Unix/Linux
Programming languages Javascript, R
Computer skills Advanced
Stability Stable
Requirements Cutadapt, bowtie, Rsamtools, rhdf5, rtracklayer, RcppRoll, data.table
Maintained Yes

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Maintainer


  • person_outline Oana Carja <>

Publication for riboviz

riboviz institution(s)
Department of Biology, University of Pennsylvania, Philadelphia, PA, USA; Department of Genetics, Rutgers University, Piscataway, NJ, USA; Human Genetics Institute of New Jersey, Piscataway, NJ, USA
riboviz funding source(s)
This work has been supported by start-up funds from Human Genetics Institute of New Jersey and Rutgers 91 University; a Penn Institute for Biomedical Informatics grant and by the David & Lucille Packard foundation, Army Research Office, and DARPA.

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