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Rice_Phospho specifications


Unique identifier OMICS_09923
Name Rice_Phospho
Interface Web user interface
Restrictions to use None
Input data Protein sequence
Input format FASTA
Computer skills Basic
Version 1.0
Stability Stable
Maintained No


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Publication for Rice_Phospho

Rice_Phospho citations


A Comprehensive Proteomic Survey of ABA Induced Protein Phosphorylation in Rice (Oryza sativa L.)

Int J Mol Sci
PMCID: 5297695
PMID: 28054942
DOI: 10.3390/ijms18010060

[…] factors provided valuable information for studies to elucidate the mechanism of these proteins in aba signaling. for example, bzip72 harbors over 40 potential phosphosites as predicted by rice phospho 1.0 tool []. however, only the ser71 and ser116 of bzip72 were detected and up-phosphrylated under aba treatment in our phosphoproteomic data (). thus, ser71 and ser116 are very likely […]


Impact of SNPs on Protein Phosphorylation Status in Rice (Oryza sativa L.)

Int J Mol Sci
PMCID: 5133773
PMID: 27845739
DOI: 10.3390/ijms17111738

[…] proliferation, differentiation and apoptosis []. a large number of phosphorylation sites in rice had been identified by nakagami et al. []. moreover, a rice-specific phosphorylation site predictor, rice_phospho 1.0, had been developed []. the resources of snps and phosphorylation sites in rice genome and proteome could contribute to the comprehensive studies of the impact of snps on protein […]


Prediction of phosphothreonine sites in human proteins by fusing different features

Sci Rep
PMCID: 5048138
PMID: 27698459
DOI: 10.1038/srep34817

[…] for example, ingrell et al. developed netphosyeast to predict yeast-specific phosphorylation site based on neural network method. lin et al. developed a rice-specific svm predictor called rice_phospho by combining amino acid occurrence frequency with composition of k-spaced amino acid pairs. to identify kinase-specific phosphorylation site, huang et al. developed a kinase-specific […]

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Rice_Phospho institution(s)
College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, China

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