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Rice PIPELINE specifications


Unique identifier OMICS_24004
Interface Web user interface
Restrictions to use None
Computer skills Basic
Maintained No


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Publication for Rice PIPELINE

Rice PIPELINE citations


Increase in Cellulose Accumulation and Improvement of Saccharification by Overexpression of Arabinofuranosidase in Rice

PLoS One
PMCID: 3817243
PMID: 24223786
DOI: 10.1371/journal.pone.0078269

[…] To select the ARAF genes of rice, we searched the Rice PIPELINE database (http://cdna01.dna.affrc.go.jp/PIPE/; ) and identified 16 putative ARAF genes with reference to the Carbohydrate-Active enzyme [CAZy] database (http://www.cazy.org; ), showing […]


Plasmodesmal receptor like kinases identified through analysis of rice cell wall extracted proteins

PMCID: 3111878
PMID: 21161304
DOI: 10.1007/s00709-010-0251-4

[…] enient cloning. On this basis, 15 RLKs were studied for targeting as fluorescent protein fusions with GFP using an Agrobacterium-based transient expression system. 15 RLK cDNAs were obtained from the rice PIPELINE database (http://cdna01.dna.affrc.go.jp/PIPE/; Yazaki et al. ). Table  presents the genomic information for these 15 RLK genes. The SMART program (http://smart.embl-heidelberg.de/; Letun […]


Rice Molecular Breeding Laboratories in the Genomics Era: Current Status and Future Considerations

Int J Plant Genomics
PMCID: 2408710
PMID: 18528527
DOI: 10.1155/2008/524847

[…] gene functions but also complex pathways [].The generation of a deluge of genomics data has been accompanied by several integrative bioinformatics tools and databases. One notable example is called “Rice PIPELINE” which was developed for the collection and compilation of genomics data, including genome sequences, full-length cDNAs, gene expression profiles, mutant lines, and cis elements from va […]


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Rice PIPELINE institution(s)
Department of Molecular Biology, National Institute of Agrobiological Sciences, Kannon-dai, Tsukuba, Japan; Hitachi Software Engineering Co., Ltd, Higashishinagawa, Tokyo, Japan
Rice PIPELINE funding source(s)
Supported by a grant from the Ministry of Agriculture, Forestry, and Fisheries of Japan (Rice Genome Project SY-1112).

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