Ricebase specifications

Information


Unique identifier OMICS_12555
Name Ricebase
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes

Maintainer


  • person_outline J. D. Edwards

Publication for Ricebase

Ricebase citation

library_books

Genetic architecture of cold tolerance in rice (Oryza sativa) determined through high resolution genome wide analysis

2017
PLoS One
PMCID: 5345765
PMID: 28282385
DOI: 10.1371/journal.pone.0172133

[…] ngside the MSU7 genome assembly, HDRA SNPs, RGP 3K SNPs, MSU7 gene and repeat annotations, and annotations downloaded from the Gramene database[] using the genome viewer JBrowse v1.11.5[] instance on Ricebase[]. The pairwise LD between SNPs was used as a rough visual approximation of the local rate of LD decay to guide manual selection of candidate genes. The “GWAS Viewer” tool (http://ricediversi […]

Ricebase institution(s)
Dale Bumpers National Rice Research Center, USDA-ARS, Stuttgart, AR, USA; Boyce Thompson Institute, Ithaca, NY, USA

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