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Ricedb specifications


Unique identifier OMICS_22044
Name Ricedb
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained No


  • Plants and Fungi
    • Oryza sativa


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Publication for Ricedb

Ricedb citations


Microarray Analysis of Rice d1 (RGA1) Mutant Reveals the Potential Role of G Protein Alpha Subunit in Regulating Multiple Abiotic Stresses Such as Drought, Salinity, Heat, and Cold

Front Plant Sci
PMCID: 4729950
PMID: 26858735
DOI: 10.3389/fpls.2016.00011

[…] to heat, drought, salt, and cold. In order to identify additional stress-related genes among RGA1-responsive genes, our entire RGA1-regulated transcriptome was used as an input at the online database RiceDB (Narsai et al., ) to identify all the rice genes that responded to at least one of the four abiotic stresses i.e., cold, heat, drought, and salt. These genes were sorted into up-regulated and d […]


High Occurrence of Functional New Chimeric Genes in Survey of Rice Chromosome 3 Short Arm Genome Sequences

Genome Biol Evol
PMCID: 3673630
PMID: 23651622
DOI: 10.1093/gbe/evt071
call_split See protocol

[…] , O. nivara and O. rufipogon were downloaded from Gramene (http://www.gramene.org/). Chr3s sequences of O. sativa ssp. indica were downloaded from 2003/10/7 BGI version (ftp://ftp.genomics.org.cn/pub/ricedb/rice_update_data/genome/9311). The whole-genome sequences of O. glaberrima were downloaded from http://www.iplantcollaborative.org/. We performed genome pairwise comparisons between O. sativa s […]

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Ricedb institution(s)
ARC Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, WA, Australia; Centre for Computational Systems Biology, University of Western Australia, Crawley, WA, Australia; State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China
Ricedb funding source(s)
Supported by an Australian Research Council Centre of Excellence Grant CEO561495, the Western Australian State Government Centres of Excellence scheme and Super Science grant (FS100100022).

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