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Plants and Fungi
- Oryza sativa
- person_outline Insuk Lee
Publication for RiceNet
Learning from Co expression Networks: Possibilities and Challenges
[…] ell-known networks, such as those from model plants like Arabidopsis, can enrich more sparse networks of crops, such as rice, although Lee et al. () demonstrated a higher accuracy for a rice network, RiceNet, derived from data of diverse species (with 15.5% of true positive linkages) than for a rice network derived solely from orthology with AraNet, the Arabidopsis network (with 6.5% true positive […]
Associations of SNPs located at candidate genes to bovine growth traits, prioritized with an interaction networks construction approach
[…] ae. The functional networks for each of these organisms were downloaded from the FunctionalNet server (http://www.functionalnet.org/): HumanNet v.1 , MouseNet v.1 , WormNet v.2 , AraNet v.1 , RiceNet v.1  and YeastNet v.2 . From each of these functional networks, a B. taurus network was derived using an interologous approach , and the value previously associated with each of these in […]
A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress
[…] ith a yellow outline in Figures D, C and Additional file : Figure S2C). To find proteins that interact with tryptophan biosynthetic pathway enzymes we probed the rice probabilistic functional network RiceNet (http://www.functionalnet.org/ricenet/). It is primarily a genome-scale network based on predicted protein-protein interactions and co-expression. […]
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