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RiceNet specifications

Information


Unique identifier OMICS_07855
Name RiceNet
Restrictions to use None
Version 2.0
Maintained Yes

Taxon


  • Plants and Fungi
    • Oryza sativa

Maintainer


  • person_outline Insuk Lee

Publication for RiceNet

RiceNet citations

 (3)
library_books

Learning from Co expression Networks: Possibilities and Challenges

2016
Front Plant Sci
PMCID: 4825623
PMID: 27092161
DOI: 10.3389/fpls.2016.00444

[…] ell-known networks, such as those from model plants like Arabidopsis, can enrich more sparse networks of crops, such as rice, although Lee et al. () demonstrated a higher accuracy for a rice network, RiceNet, derived from data of diverse species (with 15.5% of true positive linkages) than for a rice network derived solely from orthology with AraNet, the Arabidopsis network (with 6.5% true positive […]

library_books

Associations of SNPs located at candidate genes to bovine growth traits, prioritized with an interaction networks construction approach

2015
BMC Genet
PMCID: 4511253
PMID: 26198337
DOI: 10.1186/s12863-015-0247-3

[…] ae. The functional networks for each of these organisms were downloaded from the FunctionalNet server (http://www.functionalnet.org/): HumanNet v.1 [], MouseNet v.1 [], WormNet v.2 [], AraNet v.1 [], RiceNet v.1 [] and YeastNet v.2 []. From each of these functional networks, a B. taurus network was derived using an interologous approach [], and the value previously associated with each of these in […]

library_books

A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress

2013
PMCID: 4883713
PMID: 24280345
DOI: 10.1186/1939-8433-6-15

[…] ith a yellow outline in Figures┬áD, C and Additional file : Figure S2C). To find proteins that interact with tryptophan biosynthetic pathway enzymes we probed the rice probabilistic functional network RiceNet (http://www.functionalnet.org/ricenet/). It is primarily a genome-scale network based on predicted protein-protein interactions and co-expression. […]


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RiceNet institution(s)
Department of Biotechnology, College of Life Sciences and Biotechnology, Yonsei University, Seoul, Korea

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