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|Alternative name||Rice Variation Map|
|Restrictions to use||None|
Plants and Fungi
- Oryza sativa
Publication for Rice Variation Map
Genetic Architecture of Natural Variation in Rice Nonphotochemical Quenching Capacity Revealed by Genome Wide Association Study
[…] encing, SNP identification, and imputation of the association panel have been reported in previous studies (Wang et al., ; Xie et al., ). The SNPs of the 529 O. sativa accessions are available at the RiceVarMap (http://ricevarmap.ncpgr.cn). There were 2,767,191, 1,857,866, 1,925,362, and 3,916,415 SNPs (minor allele frequency ≥0.05; the number of accessions with minor alleles ≥6) used in GWAS for […]
A Novel Tiller Angle Gene, TAC3, together with TAC1 and D2 Largely Determine the Natural Variation of Tiller Angle in Rice Cultivars
[…] re genotyped with approximately 2.5× coverage, and the genome was sequenced using a bar-coded multiplex sequencing approach on an Illumina Genome Analyzer II . We obtained the genome sequences from RiceVarMap (http://ricevarmap.ncpgr.cn/) . A total of 446 O. rufipogon accessions were used to calculate nucleotide diversity (π). The details of these accessions and their sequencing data have been […]
Comparative and parallel genome wide association studies for metabolic and agronomic traits in cereals
[…] Sequence data were obtained from the website RiceVarMap (http://ricevarmap.ncpgr.cn). Only SNPs with an MAF≥0.05 and the number of varieties with a minor allele≥6 in a (sub) panel were used to perform the mGWAS. There are 2,767,191, 1,857,866 an […]
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