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RID specifications


Unique identifier OMICS_27156
Name RID
Alternative name Retrovirus Integration Database
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes


  • person_outline Wei Shao
  • person_outline RID Team

Publication for Retrovirus Integration Database

RID citations


High resolution AFM structure of DNA G wires in aqueous solution

Nat Commun
PMCID: 5958085
PMID: 29773796
DOI: 10.1038/s41467-018-04016-y

[…] was used for all subsequent processing of the flattened AFM images. For periodicity analysis from high-resolution images, a two-dimensional (2D) fast Fourier transform (FFT) filter was applied to get rid of high frequency periodic noise along the slow scan axis followed by a median filter of 3 pixel-width (Supplementary Fig. ) and Gaussian filter with σ = 2. All images in the paper have the same p […]


Inter genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum

BMC Genomics
PMCID: 5907747
PMID: 29673315
DOI: 10.1186/s12864-018-4612-2

[…] point mutation (RIP) defence mechanism []. The presence of the same mechanism in F. venenatum of gene inactivation is partially supported by the presence of an orthologue of the DNA methyltransferase RID (RIP defective) required for RIP in N. crassa [, ] and the orthologous neighbouring 10 genes.The recent evolution of F. graminearum in the homothallic FGSG species complex, means the fungus can pr […]


On the wrong track: ocean acidification attracts larval fish to irrelevant environmental cues

Sci Rep
PMCID: 5895586
PMID: 29643393
DOI: 10.1038/s41598-018-24026-6

[…] elevated CO2 are retained for > 24 hrs when fish arte transferred to ambient conditions. After each trial with 8 fish, we cleaned the tank and chamber and replenished them with unused seawater to get rid of any chemical cues from the previously used fish.We used EthoVision XT10 (Noldus Information Technology, Wageningen, The Netherlands) to automatically track the position and swimming speed of ea […]


Hippocampal protein kinase D1 is necessary for DHPG induced learning and memory impairments in rats

PLoS One
PMCID: 5882104
PMID: 29614089
DOI: 10.1371/journal.pone.0195095

[…] balanced between rats and between sessions in order to avoid positional bias. Both the objects and the open field apparatus were thoroughly wiped clean between trials with 70% ethanol in order to get rid of olfactory cues.Rat behaviors during all sessions were video-recorded and quantified using EthoVision XT 8 (Noldus Information Technology, Leesburg, VA). The total distance moved, speed, time sp […]


Solution scattering study of the Bacillus subtilis PgdS enzyme involved in poly γ glutamic acids degradation

PLoS One
PMCID: 5880399
PMID: 29608608
DOI: 10.1371/journal.pone.0195355

[…] ine at NCPSS (Shanghai, China), equipped with a robotic sample changer and a PILATUS 1M detector []. All samples were centrifuged at the speed of 13,000 rpm for 10 min just before measurements to get rid of aggregations and sediments. 2 mM DTT was added into the samples and buffers before measurement to avoid radiation damage. The exposure time of one frame is one seconds. Twenty successive frames […]


High resolution Volume Imaging of Neurons by the Use of Fluorescence eXclusion Method and Dedicated Microfluidic Devices

PMCID: 5933246
PMID: 29630044
DOI: 10.3791/56923

[…] n of 0.5-1 mg/mL in the imaging medium. NOTE: Use Dextran conjugates with Absorption/Emission maxima 496/524 or 650/668. Prefer the first to image 0.45 µm high positive photoresist structures (to get rid of their auto fluorescence in the red bandwidth) and the second to image neurons (less toxic).Empty all inlets using a 10-µL pipette and re-fill them completely with the imaging medium (refer to s […]


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RID institution(s)
Advanced Biomedical Computing Center, Leidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research (FNLCR), Frederick, MD, USA; HIV Dynamics and Replication Program, NCI, Frederick, MD, USA; Leidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research (FNLCR), Frederick, MD, USA; Division of Infectious Disease, University of Pittsburgh, Pittsburgh, PA, USA; Department of Molecular Biology and Microbiology, Tufts University, Boston, MA, USA
RID funding source(s)
Supported by NCI CCR, the Office of AIDS Research, NIH, and NCI Contract No. HHSN261200800001E.

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